jabot_parse

Parse Darwin Core Archive files

jabotR::jabot_parse()

Description

Read Darwin Core Archive (DwC-A) files from any downloaded dwca folder at JABOT hosted by the Rio de Janeiro Botanical Garden.

Arguments

Argument	Description
path	Pathway to the computer’s directory, where the REFLORA-downloaded dwca folders are.
herbarium	A vector of specific herbarium acronyms (collection code) in uppercase letters or leave it as `NULL` to parse specimen records for all herbarim dcwa folders in the defined path directory.
verbose	Logical, if `FALSE`, a message showing steps when summarizing specimen records will not be printed in the console in full.

Value

A list of dwca files, including data and associated metada.

Examples

jabot_download(herbarium = c("ALCB", "HUEFS", "K", "RB"),
               verbose = TRUE,
               dir = "jabot_download")

dwca <- jabot_parse(path = "jabot_download",
                    verbose = TRUE)

---
title: 'jabot_parse'
description: 'Parse Darwin Core Archive files'
toc: true
toc-depth: 3
---


```{r}
#| eval: false
jabotR::jabot_parse()
```

### Description

Read Darwin Core Archive (DwC-A) files from any downloaded dwca
folder at [JABOT](https://ipt.jbrj.gov.br/jabot) hosted by the
[Rio de Janeiro Botanical Garden](https://www.gov.br/jbrj/pt-br).

### Arguments

| Argument | Description |
|---|---|
| path | Pathway to the computer's directory, where the REFLORA-downloaded dwca folders are. |
| herbarium | A vector of specific herbarium acronyms (collection code) in uppercase letters or leave it as `NULL` to parse specimen records for all herbarim dcwa folders in the defined path directory. |
| verbose | Logical, if `FALSE`, a message showing steps when summarizing specimen records will not be printed in the console in full. |

### Value

A list of dwca files, including data and associated metada.

### Examples

```r
jabot_download(herbarium = c("ALCB", "HUEFS", "K", "RB"),
               verbose = TRUE,
               dir = "jabot_download")

dwca <- jabot_parse(path = "jabot_download",
                    verbose = TRUE)
```