evomodelCmds

Convert model names into efficient MrBayes commands

catGenes::evomodelCmds()

Description

Convert model names into efficient MrBayes commands

Arguments

Argument	Description
model_vector	A character vector of model names where the position/index corresponds to the MrBayes partition number (e.g., `c("GTR+G+I", "HKY+G", "GTR+G+I")`). Partition 1 gets the first model, Partition 2 the second, etc.

Value

A list with:

grouped_commands
: A data frame showing partition grouping.
all_commands
: A character vector of unique
lset
and
prset
commands.
partition_map
: A named vector showing final partition assignments.

Examples

# Partitions 1 and 3 share the same model, partition 2 is different
models <- c("GTR+G(4)+I", "HKY+G(4)", "GTR+G(4)+I")
cmds <- evomodelCmds(model_vector = models)
cat(cmds$all_commands, sep = "\n")

---
title: 'evomodelCmds'
description: 'Convert model names into efficient MrBayes commands'
toc: true
toc-depth: 3
---


```{r}
#| eval: false
catGenes::evomodelCmds()
```

### Description

Convert model names into efficient MrBayes commands

### Arguments

| Argument | Description |
|---|---|
| model_vector | A character vector of model names where the position/index corresponds to the MrBayes partition number (e.g., `c("GTR+G+I", "HKY+G", "GTR+G+I")`). Partition 1 gets the first model, Partition 2 the second, etc. |

### Value

A list with:

- 

- 
-  
- `grouped_commands`
- : A data frame showing partition grouping.

- 
-  
- `all_commands`
- : A character vector of unique 
- `lset`
-  and 
- `prset`
-  commands.

- 
-  
- `partition_map`
- : A named vector showing final partition assignments.

### Examples

```r
# Partitions 1 and 3 share the same model, partition 2 is different
models <- c("GTR+G(4)+I", "HKY+G(4)", "GTR+G(4)+I")
cmds <- evomodelCmds(model_vector = models)
cat(cmds$all_commands, sep = "\n")
```